Sanger chain-termination DNA sequencing requires deoxyribonucleoside triphosphates for synthesis. Which of the following are needed as the standard dNTP substrates?

Biochemistry DNA Structure and Replication Difficulty: Medium
Choose an option
  • A
    dATP
  • B
    dGTP and dCTP
  • C
    dTTP
  • D
    All of these (all four dNTPs are required)
  • E
    Only ddNTPs without any dNTPs

Answer

Correct Answer: All of these (all four dNTPs are required)

Explanation

Introduction / Context:In Sanger sequencing, DNA polymerase extends a primer using normal deoxyribonucleotides (dNTPs) while occasional incorporation of a dideoxynucleotide (ddNTP) terminates extension. Understanding the role of both dNTPs and ddNTPs is essential.

Given Data / Assumptions:

  • The method is “chain-termination”.
  • Standard dNTPs drive processive synthesis; ddNTPs cause termination when incorporated.

Concept / Approach:Polymerization requires the full set of dNTPs: dATP, dTTP, dGTP, and dCTP. ddNTPs are added at limiting ratios to terminate chains at specific bases. Without dNTPs, polymerase cannot extend, and sequencing would fail.

Step-by-Step Solution:

1) Identify the substrates for normal extension: all four dNTPs.2) Recognize ddNTPs are terminators, not the main substrates.3) Conclude that dATP, dTTP, dGTP, and dCTP are required.

Verification / Alternative check:Standard protocols specify a mixture of all four dNTPs plus small amounts of labeled or unlabeled ddNTPs.

Why Other Options Are Wrong:

  • dATP only, or subsets like dGTP and dCTP, or dTTP only: incomplete; synthesis across diverse templates would stall at missing bases.
  • Only ddNTPs: would halt immediately; no readable ladders form.

Common Pitfalls:Confusing the role of ddNTPs (terminators) with dNTPs (building blocks); overlooking that balanced dNTP pools are critical for uniform read lengths.

Final Answer:All of these (all four dNTPs are required)

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