Prokaryotic promoter elements: What is the usual consensus sequence of the Pribnow box (−10 element) in bacterial promoters?
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AAUAUA
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BTATAAT
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CUUUUU
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DTTGACA
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ECGCGCG
Answer
Correct Answer: TATAAT
Explanation
Introduction / Context:Promoters are DNA sequences that position RNA polymerase for accurate initiation of transcription. In bacteria, two key hexamer elements are commonly recognized: the −35 region and the −10 region, also known as the Pribnow box.
Given Data / Assumptions:
- The Pribnow box lies approximately 10 base pairs upstream of the transcription start site.
- Consensus sequences reflect the most common nucleotides at each position among strong promoters.
- We are dealing with DNA sequences written in the coding strand sense.
Concept / Approach:The canonical −10 element consensus is TATAAT. This AT-rich sequence facilitates DNA unwinding during open complex formation by RNA polymerase. The −35 element has a different consensus, typically TTGACA, and provides an additional binding site for sigma factor within the holoenzyme.
Step-by-Step Solution: Recall that the −10 (Pribnow) consensus is AT-rich. Match options with known consensus: TATAAT fits the −10 box. Recognize TTGACA as the −35 element, not the −10 element. Select TATAAT as the correct answer.
Verification / Alternative check:Mutational analyses show that deviations from TATAAT at key positions reduce promoter strength, confirming the functional importance of this consensus.
Why Other Options Are Wrong:
- TTGACA: −35 consensus, not −10.
- AUAUA / UUUUU: RNA-like sequences, not DNA promoter elements.
- CGCGCG: GC-rich and does not serve as a standard −10 element.
Common Pitfalls:Confusing RNA sequences with DNA promoter consensus or mixing up the −35 and −10 elements.
Final Answer:TATAAT.