Assay format in microarray analysis: Modern microarray workflows carry out biological assays primarily on which type of substrate?

Difficulty: Easy

Correct Answer: Small glass chips (or similar solid substrates) patterned with probes

Explanation:


Introduction / Context:
Microarray assays rely on immobilized probes arranged in high-density patterns on solid substrates. The substrate must support surface chemistry for probe attachment, optical transparency for scanning, and dimensional stability.



Given Data / Assumptions:

  • Microarrays are high-density, chip-based devices for parallel analysis.
  • Common substrates include glass slides and specialized polymers.
  • Assays involve hybridization or binding events detected via imaging.


Concept / Approach:
Glass chips provide flatness, optical clarity, and robust chemistries (for example, aldehyde, epoxide, silane) to immobilize DNA, proteins, or glycans. They are compatible with fluorescence scanners and automated spotters.



Step-by-Step Solution:

Identify the essential needs: stable, addressable, optically compatible substrate.Match to substrate: small glass chips fulfill these requirements.Reject alternatives that are used for different purposes (gels, filters, columns).


Verification / Alternative check:
Industry-standard microarray formats use microscope-slide-sized glass chips with standardized dimensions for printers and scanners.



Why Other Options Are Wrong:

Gels and filters: useful in blotting or electrophoresis, not the core microarray substrate.Purification columns: used for separations, not spatial arrays.Metal plates without appropriate chemistry: unsuitable for optical scanning and probe immobilization.


Common Pitfalls:
Confusing microarrays with electrophoretic methods; both are analytical but use different platforms.



Final Answer:
Small glass chips (or similar solid substrates) patterned with probes.

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