Prokaryotic promoter elements: What is the usual consensus sequence of the Pribnow box (−10 element) in bacterial promoters?

Difficulty: Easy

Correct Answer: TATAAT

Explanation:


Introduction / Context:
Promoters are DNA sequences that position RNA polymerase for accurate initiation of transcription. In bacteria, two key hexamer elements are commonly recognized: the −35 region and the −10 region, also known as the Pribnow box.



Given Data / Assumptions:

  • The Pribnow box lies approximately 10 base pairs upstream of the transcription start site.
  • Consensus sequences reflect the most common nucleotides at each position among strong promoters.
  • We are dealing with DNA sequences written in the coding strand sense.



Concept / Approach:
The canonical −10 element consensus is TATAAT. This AT-rich sequence facilitates DNA unwinding during open complex formation by RNA polymerase. The −35 element has a different consensus, typically TTGACA, and provides an additional binding site for sigma factor within the holoenzyme.



Step-by-Step Solution:
Recall that the −10 (Pribnow) consensus is AT-rich. Match options with known consensus: TATAAT fits the −10 box. Recognize TTGACA as the −35 element, not the −10 element. Select TATAAT as the correct answer.



Verification / Alternative check:
Mutational analyses show that deviations from TATAAT at key positions reduce promoter strength, confirming the functional importance of this consensus.



Why Other Options Are Wrong:

  • TTGACA: −35 consensus, not −10.
  • AUAUA / UUUUU: RNA-like sequences, not DNA promoter elements.
  • CGCGCG: GC-rich and does not serve as a standard −10 element.



Common Pitfalls:
Confusing RNA sequences with DNA promoter consensus or mixing up the −35 and −10 elements.



Final Answer:
TATAAT.


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