Which of the following is NOT a structural DNA-binding motif commonly found in transcription factors?
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ATFIID
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BHelix–turn–helix
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CZinc finger
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DbZIP (basic leucine zipper)
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EHelix–loop–helix
Answer
Correct Answer: TFIID
Explanation
Introduction / Context:DNA-binding proteins often use recurring structural motifs to contact specific sequences in promoters and enhancers. Recognizing these motifs helps identify likely transcription factors from domain annotations.
Given Data / Assumptions:
- We are comparing structural motifs, not entire multiprotein complexes.
- Motifs are short, recurring 3D arrangements such as helix–turn–helix or zinc finger.
Concept / Approach:Helix–turn–helix, zinc finger, bZIP, and helix–loop–helix are classical DNA-binding motifs. TFIID, however, is a large multi-subunit general transcription factor complex (containing TBP and TAFs), not a single structural motif.
Step-by-Step Solution:
1) List common motifs used by sequence-specific DNA-binding proteins.2) Identify entries that are complexes or factors rather than motifs.3) TFIID stands out as a complex, so it is not a motif.Verification / Alternative check:Protein domain databases categorize helix–turn–helix, zinc finger, bZIP, and HLH as motifs, while TFIID is cataloged as a complex assembling at core promoters to recruit RNA polymerase II.
Why Other Options Are Wrong:
- Helix–turn–helix: Classic motif in many bacterial repressors and eukaryotic factors.
- Zinc finger: Cys2His2 and other variants bind DNA via coordinated zinc ions.
- bZIP: Dimeric motif with basic region for DNA contact and leucine zipper for dimerization.
- Helix–loop–helix: Found in developmental regulators; facilitates dimerization and DNA binding.
Common Pitfalls:Confusing a multiprotein complex name (TFIID) with a structural motif, or assuming all transcription-related terms are motifs.
Final Answer:TFIID.