Which enzyme listed lacks 3'→5' exonuclease (proofreading) activity under standard conditions used in PCR and DNA synthesis workflows?
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AShort fragment of DNA polymerase I (Klenow fragment)
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BTaq DNA polymerase
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CT4 DNA ligase
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DAll of the above
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EDNA polymerase III holoenzyme
Answer
Correct Answer: Taq DNA polymerase
Explanation
Introduction / Context:Proofreading improves fidelity by removing misincorporated nucleotides via 3'→5' exonuclease activity. Different polymerases vary in this capability, directly affecting error rates in amplification and synthesis applications such as PCR or cloning.
Given Data / Assumptions:
- Klenow fragment retains 3'→5' exonuclease.
- Taq polymerase (from Thermus aquaticus) lacks 3'→5' proofreading.
- Ligases do not have exonuclease activity and are not polymerases.
Concept / Approach:Taq DNA polymerase performs 5'→3' polymerization but lacks 3'→5' exonuclease. Consequently, its base substitution error rate is higher than that of proofreading polymerases (for example, Pfu, Phusion). Klenow and E. coli Pol III possess proofreading; ligase is irrelevant to exonuclease discussion.
Step-by-Step Solution:Identify which enzyme is classically known as non-proofreading: Taq.Eliminate Klenow (has 3'→5' exonuclease) and Pol III (proofreading core subunits).Ignore ligase for exonuclease properties; it seals nicks, not edits bases.
Verification / Alternative check:High-fidelity PCR protocols replace Taq with proofreading enzymes specifically to gain 3'→5' exonuclease activity and reduce errors.
Why Other Options Are Wrong:
- Klenow: retains proofreading even though it lacks 5'→3' exonuclease of full Pol I.
- T4 DNA ligase: not a polymerase; exonuclease activity is not its function.
- “All of the above”: false because Klenow and Pol III proofread.
Common Pitfalls:Assuming thermostable equals proofreading; thermostability and exonuclease capability are independent traits.
Final Answer:Taq DNA polymerase