Template requirements in PCR — Under standard DNA PCR (not RT-PCR), which nucleic acid template is used for amplification?

Difficulty: Easy

Correct Answer: double stranded DNA

Explanation:


Introduction / Context:
PCR amplifies specific DNA sequences using cycles of denaturation, primer annealing, and extension. Clarifying what nucleic acid serves as the template in standard PCR (as opposed to reverse-transcription PCR) helps avoid common laboratory errors and misinterpretations.



Given Data / Assumptions:

  • The question refers to conventional DNA PCR, not RT-PCR.
  • Primers are DNA oligonucleotides that anneal to complementary DNA sequences.
  • Thermocycling includes an initial denaturation step to separate strands.


Concept / Approach:
Standard PCR uses double-stranded DNA (dsDNA) as the starting template. The first denaturation step separates the two strands, producing single-stranded regions for primer binding. Although PCR can, in principle, amplify from single-stranded DNA if a primer can anneal, the canonical and routinely used template is dsDNA. RNA templates require an additional reverse transcription step to generate complementary DNA (cDNA) for amplification (RT-PCR), and therefore are not the direct template in standard PCR.



Step-by-Step Solution:

Recognize the workflow: denature dsDNA → anneal primers → extend with DNA polymerase.Exclude RNA because standard PCR polymerases are DNA-dependent DNA polymerases.Select “double stranded DNA” as the default and most accurate answer.


Verification / Alternative check:
Protocol manuals specify an initial denaturation of dsDNA templates prior to cycling, confirming the routine use of dsDNA.



Why Other Options Are Wrong:

  • RNA: requires reverse transcription first (RT-PCR).
  • Single-stranded DNA: possible but not the standard template described in basic PCR methods.
  • None of these: incorrect because dsDNA is correct.


Common Pitfalls:
Confusing RT-PCR (RNA → cDNA → PCR) with DNA PCR; always verify the nature of the input nucleic acid.



Final Answer:
double stranded DNA

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