Visualizing proteins in polyacrylamide gels — Which approach directly reveals protein bands after electrophoresis?

Difficulty: Easy

Correct Answer: Staining the gel with a protein-binding dye (e.g., Coomassie Brilliant Blue)

Explanation:


Introduction:
After electrophoresis, proteins in polyacrylamide gels are typically invisible. Visualization requires dyes or labels that bind proteins to produce contrast against the clear gel background.


Given Data / Assumptions:

  • Most proteins lack intrinsic color at low concentrations.
  • Common dyes include Coomassie Brilliant Blue and silver stain; fluorescent stains are also used.
  • Gels must often be destained to reduce background.


Concept / Approach:
Dyes interact non-covalently with proteins, allowing discrete bands to be seen and documented. Sensitivity and linearity vary by stain, influencing quantitation and detection limits.


Step-by-Step Solution:

1) Run electrophoresis to separate proteins by mass (SDS–PAGE) or by other criteria (native/IEF).2) Immerse gel in staining solution to bind dye to protein bands.3) Destain until background clears and bands are visible for imaging and analysis.


Verification / Alternative check:
Include molecular weight standards; their visible bands confirm staining quality and enable mass estimation by comparison.


Why Other Options Are Wrong:

b) Electron microscopy is not a standard method for intact, hydrated gels.c) Sequence-based estimates do not generate visual bands.d) Most proteins are colorless at analytical concentrations.e) Electrical measurements do not visualize band positions.


Common Pitfalls:
Overstaining leading to high background; under-destaining obscuring bands; neglecting fixation steps when required by the staining protocol.


Final Answer:
Stain the gel with a protein-binding dye to visualize bands.

More Questions from Gel Electrophoresis

Discussion & Comments

No comments yet. Be the first to comment!
Join Discussion