Restriction cloning — To insert a foreign gene into a plasmid vector so that the ends are compatible, what must be true for both DNA molecules?

Difficulty: Easy

Correct Answer: They must be cut with the same restriction enzyme (or enzymes producing compatible ends)

Explanation:


Introduction:
Conventional restriction–ligation cloning depends on creating complementary DNA ends on an insert and a plasmid so they can be joined by DNA ligase. This question targets the critical compatibility requirement for successful ligation and cloning.


Given Data / Assumptions:

  • Restriction enzymes generate defined ends: sticky (cohesive) or blunt.
  • DNA ligase seals phosphodiester bonds when ends are apposed correctly.
  • Insert and vector need compatible ends to anneal and be ligated efficiently.


Concept / Approach:
Using the same restriction enzyme on insert and vector (or a pair that yields compatible overhangs) ensures complementary ends. Length, species origin, or entire sequence identity are irrelevant to end compatibility in standard cloning workflows.


Step-by-Step Solution:

1) Choose a restriction site present in the multiple-cloning site of the vector and flanking the insert.2) Digest both DNAs with that enzyme to produce matching ends (e.g., 5′ overhangs).3) Anneal the cohesive ends and ligate with T4 DNA ligase.4) Transform competent cells and select for colonies containing the recombinant plasmid.


Verification / Alternative check:
Successful cloning is confirmed by colony PCR, diagnostic restriction mapping, or sequencing across the junctions.


Why Other Options Are Wrong:

a,b,d) Identity of source or length is not required; only ends must be compatible.e) Multiple resistance genes are unnecessary and undesirable.


Common Pitfalls:
Using enzymes that create incompatible overhangs; forgetting to dephosphorylate the vector when needed to reduce background self-ligation.


Final Answer:
Both DNAs must be cut with the same restriction enzyme (or enzymes generating compatible ends).

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