Scatchard analysis of noncooperative binding with two sites For a protein that binds two ligands independently (noncooperative), what is the x-intercept of the Scatchard plot?

Difficulty: Medium

Correct Answer: 2

Explanation:


Introduction / Context:
The Scatchard plot (r/[L] versus r, where r is bound ligand per protein) is a traditional method to analyze binding data. For independent, identical sites, this plot provides direct access to the number of sites and the affinity constant.



Given Data / Assumptions:

  • Protein has two identical, independent binding sites.
  • Binding is noncooperative (no interaction between sites).
  • Standard Scatchard formalism is used.


Concept / Approach:
For identical independent sites, the Scatchard plot is a straight line with slope −K and x-intercept equal to the total number of binding sites n. Therefore, for two sites, the x-intercept is 2.


Step-by-Step Solution:
Use Scatchard equation: r/[L] = nK − Kr.Recognize linear form: y = a − bx with slope = K and intercept = nK.Set r/[L] = 0 to find x-intercept; solve 0 = nK − Kr ⇒ r = n.With n = 2, x-intercept equals 2.


Verification / Alternative check:
Fitting experimental data for noncooperative systems yields straight lines whose intercept gives n, providing a cross-check against stoichiometry.


Why Other Options Are Wrong:
1 corresponds to a single site; “not defined” is incorrect for well-behaved systems; the intercept is not simply the Hill coefficient and does not depend only on ligand concentration.


Common Pitfalls:
Using Scatchard plots for heterogeneous or cooperative systems leads to curvature and misinterpretation of n.


Final Answer:
2.

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