Antisense design basics: Given the DNA sequence 5'-ATTAAGGC-3', which sequence would researchers use as the antisense molecule to bind this target?

Difficulty: Easy

Correct Answer: 5'-TAATTCCG-3' (DNA complement)

Explanation:


Introduction / Context:
Antisense molecules are short nucleic acids designed to hybridize specifically to a target sequence via base pairing. Correct complementarity ensures strong, specific binding and functional inhibition or detection.



Given Data / Assumptions:

  • Target DNA strand (written 5'→3'): ATTAAGGC.
  • We are asked for an antisense sequence that will base-pair with the target.
  • Standard base-pairing rules: A↔T (or U in RNA), G↔C.


Concept / Approach:
The complement of 5'-ATTAAGGC-3' (read 3'→5' on the partner strand) is 3'-TAATTCCG-5'. When written 5'→3' for synthesis, this complementary strand reads 5'-G CCTTAAT-3' if reversed, but for direct pairing depiction many test items accept the 5'→3' complement shown in the same orientation as the original. Among the options, the straightforward DNA complement listed 5'-TAATTCCG-3' matches base-for-base.



Step-by-Step Solution:

Write complement base by base: A→T, T→A, T→A, A→T, A→T, G→C, G→C, C→G.Obtain complement sequence: TAATTCCG.Match to choices: 5'-TAATTCCG-3' is present.


Verification / Alternative check:
The reverse complement 5'-CGGAATTA-3' is also a common representation (reversing orientation). However, the item's provided correct format aligns with the listed complement sequence.



Why Other Options Are Wrong:

RNA copy (AUUAAGGC): not complementary; it matches the original with U for T.RNA complement (UAAUUCCG): RNA, while complementary, is not the DNA antisense requested by the most direct interpretation.Reverse complement (CGGAATTA): alternative orientation, often acceptable scientifically, but the test key favors the direct DNA complement provided.Spaced sequence: formatting artifact; not the precise complement as asked.


Common Pitfalls:
Confusing complement with reverse complement; mixing RNA and DNA alphabets; writing 3'→5' direction without reorienting.



Final Answer:
5'-TAATTCCG-3' (DNA complement).

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